Synthesis of 2'-methoxyl-3'-thioguanosine phosphoramidite

ORGN 393

Jun Lu, jlu@uchicago.edu, Nan-Sheng Li, nli@uchicago.edu, and Joseph A. Piccirilli, jpicciri@uchicago.edu. Departments of Biochemistry & Molecular Biology and Chemistry, Howard Hughes Medical Institute, University of Chicago, 929 East 57th Street, Room W406, Chicago, IL 60637

Metal ion rescue experiments have proved useful in determining the roles of catalytic metal ions in ribozyme structure and function. Previous experiments with the Tetrahymena group I intron reaction that used a 2'-NHxMe2-x moiety on the exogenous guanosine nucleophile have raised questions about the ability of the installed methyl group(s) to block coordination of a metal ion. In order to investigate this possible effect in the context of other metal ion rescue experiments that used the substrate CUCG3'-SA, we sought to install both a 2'-OMe group and a 3'-phosphorothioate linkage at the nucleophilic site. To incorporate the 3'-thio-2'-methoxyl Guanosine into oligonuclotides, starting from 2'-methoxyl-guanosine, an efficient route for the synthesis of 2'-methoxyl-3'-thioguanosine phosphoramidite is described (10.4 % in overall yield, eight steps).