Tandem riboswitch functions as a genetic logic gate

CARB 3

Narasimhan Sudarsan1, Ming C. Hammond, ming.hammond@yale.edu1, Kirsten F. Block1, Ruediger Welz1, Jeffrey E. Barrick2, and Ronald R. Breaker, ronald.breaker@yale.edu3. (1) Department of Molecular, Cellular, and Developmental Biology, Yale University, PO Box 208103, New Haven, CT 06520, (2) Department of Molecular Biophysics and Biochemistry, Howard Hughes Medical Institute, Yale University, PO Box 208103, New Haven, CT 06520, (3) Molecular, Cellular and Developmental Biology, Howard Hughes Medical Institute, Yale University, P.O. Box 208103, KBT 506, New Haven, DC 06520

Riboswitches are structured RNA elements usually located in the untranslated regions (UTR) of mRNAs that act as direct sensors of metabolites to control gene expression. More than a dozen distinct classes have been found to regulate the expression of genes involved in key metabolic processes. In most instances each riboswitch senses one metabolite and functions as a simple genetic switch. However, we have recently identified several examples of mRNAs that incorporate riboswitches or their components in tandem. The 5'-UTR of the Bacillus clausii metE mRNA contains a riboswitch for S-adenosylmethionine (SAM) followed by another for adenosylcobalamin (coenzyme B12). This tandem arrangement allows binding of either SAM or coenzyme B12 to repress metE expression. The resulting genetic readout of different chemical inputs corresponds to a Boolean NOR logic gate. These findings and related discoveries of other tandem motifs reveal how RNA can make sophisticated genetic decisions without involvement of protein factors.