Enzymatic N-terminal modification of peptides with non-canonical amino acids

ORGN 878

Rebecca E. Connor1, Konstantin Piatkov2, Alexander Varshavsky2, and David A. Tirrell, tirrell@caltech.edu1. (1) Division of Chemistry and Chemical Engineering, California Institute of Technology, 1200 E. California Blvd, Pasadena, CA 91125, (2) Division of Biology, California Institute of Technology, 1200 E. California Blvd., Pasadena, CA 91125
The leucyl, phenylalanyl-tRNA transferase of E. coli catalyzes the addition of the amino acid from a charged leucyl- or phenylalanyl-tRNA to an arginyl or lysyl N-terminal residue of a substrate protein. In vivo, this addition signals the degradation of the substrate protein through the N-end rule pathway. The relaxed specificity of the transferase can be exploited through the use of mutant aminoacyl-tRNA synthetases that charge tRNAs with non-canonical amino acids. The mis-charged tRNAs can act as amino acid donors for the transfer reaction. We have tested the activity of the transferase in vitro with a variety of non-canonical amino acids using a dipeptide-aminocoumarin substrate. p-Azidophenylalanine, p-cyanophenylalanine, p-ethynylphenylalanine, p-acetylphenylalanine, azidohomoalanine, homopropargylglycine, and oxonorvaline can all be utilized as aminoacyl-tRNA substrates by the L,F-transferase based on detection by HPLC and subsequent MALDI-TOF analysis. The steady-state kinetic parameters of the enzyme and individual amino acids are currently under investigation.