Fluorous affinity purification of oligonucleotides

ORGN 215

William H. Pearson, wpearson@berryassoc.com, David A. Berry, Kee-Yong Jung, Anthony D. Sercel, and Patrick Stoy. Berry & Associates, Inc, 2434 Bishop Circle East, Dexter, MI 48130
Automated oligonucleotide synthesis produces heterogeneous mixtures of products, complicating purification and limiting scale-up, especially for longmers. Installation of a nucleotide bearing a fluorous dimethoxytrityl (FDMT) group at the 5' terminus followed by solid-phase extraction (SPE) using a Fluoro-Pak™ column allows removal of non-fluorous materials. On-column detritylation with acid allows elution of the desired oligonucleotide with excellent recovery. In contrast to existing SPE methods using 5'-dimethoxytrityl oligonucleotides and reversed-phase adsorbent, the fluorous method offers higher recovery, better selectivity, and the ability to purify longmers.

 

Recent Advances in Fluorous Chemistry
8:00 AM-12:00 PM, Monday, 29 August 2005 Washington DC Convention Center -- Ballroom C, Oral

Division of Organic Chemistry

The 230th ACS National Meeting, in Washington, DC, Aug 28-Sept 1, 2005